Jean-Baptiste Sibarita

Team leader

Research engineer (IR) / CNRS

/ Team

Quantitative imaging of the cell
IINS

/ Contact

+33 5 33 51 47 06

www.orcid.org/0000-0002-9920-7700

/ Address of work
IINS - UMR 5297 - CNRS - Université de Bordeaux - Centre Broca Nouvelle-Aquitaine - 146 rue Léo-Saignat - CS 61292 CASE 130 - 33076 Bordeaux cedex -France

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Scientific articles

Arkitekt: streaming analysis and real-time workflows for microscopy
Johannes Roos, Stéphane Bancelin, Tom Delaire, Alexander Wilhelmi, Florian Levet, Maren Engelhardt, Virgile Viasnoff, Rémi Galland, U. Valentin Nägerl, Jean-Baptiste Sibarita.
Nat Methods. 2024-09-18.
10.1038/s41592-024-02404-5
Protocol for matching protein localization to synapse morphology in primary rat neurons by correlative super-resolution microscopy
Tiffany Cloâtre, Magali Mondin, Jean-Baptiste Sibarita, Florian Levet, Olivier Thoumine.
STAR Protocols. 2024-09-01. 5(3) : 103160.
10.1016/j.xpro.2024.103160
Non-canonical interplay between glutamatergic NMDA and dopamine receptors shapes synaptogenesis
Nathan Bénac, G. Ezequiel Saraceno, Corey Butler, Nahoko Kuga, Yuya Nishimura, Taiki Yokoi, Ping Su, Takuya Sasaki, Mar Petit-Pedrol, Rémi Galland, Vincent Studer, Fang Liu, Yuji Ikegaya, Jean-Baptiste Sibarita, Laurent Groc.
Nat Commun. 2024-01-02. 15(1)
10.1038/s41467-023-44301-z
Multi-synaptic boutons are a feature of CA1 hippocampal connections in the stratum oriens
Mark Rigby, Federico W. Grillo, Benjamin Compans, Guilherme Neves, Julia Gallinaro, Sophie Nashashibi, Sally Horton, Pedro M. Pereira Machado, Maria Alejandra Carbajal, Gema Vizcay-Barrena, Florian Levet, Jean-Baptiste Sibarita, Angus Kirkland, Roland A. Fleck, Claudia Clopath, Juan Burrone.
Cell Reports. 2023-05-01. 42(5) : 112397.
10.1016/j.celrep.2023.112397
Nanoscale and functional heterogeneity of the hippocampal extracellular space
Diego Grassi, Agata Idziak, Antony Lee, Ivo Calaresu, Jean-Baptiste Sibarita, Laurent Cognet, U. Valentin Nägerl, Laurent Groc.
Cell Reports. 2023-05-01. 42(5) : 112478.
10.1016/j.celrep.2023.112478
PoCA: a software platform for point cloud data visualization and quantification
Florian Levet, Jean-Baptiste Sibarita.
Nat Methods. 2023-03-03.
10.1038/s41592-023-01811-4
A framework for evaluating the performance of SMLM cluster analysis algorithms
Daniel J. Nieves, Jeremy A. Pike, Florian Levet, David J. Williamson, Mohammed Baragilly, Sandra Oloketuyi, Ario de Marco, Juliette Griffié, Daniel Sage, Edward A. K. Cohen, Jean-Baptiste Sibarita, Mike Heilemann, Dylan M. Owen.
Nat Methods. 2023-02-01. 20(2) : 259-267.
10.1038/s41592-022-01750-6
EndophilinA-dependent coupling between activity-induced calcium influx and synaptic autophagy is disrupted by a Parkinson-risk mutation
Adekunle T. Bademosi, Marianna Decet, Sabine Kuenen, Carles Calatayud, Jef Swerts, Sandra F. Gallego, Nils Schoovaerts, Spyridoula Karamanou, Nikolaos Louros, Ella Martin, Jean-Baptiste Sibarita, Katlijn Vints, Natalia V. Gounko, Frédéric A. Meunier, Anastassios Economou, Wim Versées, Frederic Rousseau, Joost Schymkowitz, Sandra-F. Soukup, Patrik Verstreken.
Neuron. 2023-02-01.
10.1016/j.neuron.2023.02.001
Fyn nanoclustering requires switching to an open conformation and is enhanced by FTLD-Tau biomolecular condensates
Ramón Martínez-Mármol, Christopher Small, Anmin Jiang, Tishila Palliyaguru, Tristan P. Wallis, Rachel S. Gormal, Jean-Baptiste Sibarita, Jürgen Götz, Frédéric A. Meunier.
Mol Psychiatry. 2022-10-18. 28(2) : 946-962.
10.1038/s41380-022-01825-y
Single‐molecule imaging reveals Tau trapping at nanometer‐sized dynamic hot spots near the plasma membrane that persists after microtubule perturbation and cholesterol depletion
Pranesh Padmanabhan, Andrew Kneynsberg, Esteban Cruz, Rumelo Amor, Jean‐Baptiste Sibarita, Jürgen Götz.
The EMBO Journal. 2022-08-25. 41(19)
10.15252/embj.2022111265
Author Correction: Nanoscale regulation of Ca2+ dependent phase transitions and real-time dynamics of SAP97/hDLG
Premchand Rajeev, Nivedita Singh, Adel Kechkar, Corey Butler, Narendrakumar Ramanan, Jean-Baptiste Sibarita, Mini Jose, Deepak Nair.
Nat Commun. 2022-08-01. 13(1)
10.1038/s41467-022-32251-x
Nanoscale regulation of Ca2+ dependent phase transitions and real-time dynamics of SAP97/hDLG
Premchand Rajeev, Nivedita Singh, Adel Kechkar, Cory Butler, Narendrakumar Ramanan, Jean-Baptiste Sibarita, Mini Jose, Deepak Nair.
Nat Commun. 2022-07-22. 13(1)
10.1038/s41467-022-31912-1
MID3A: Microscopy Image Denoising meets Differentiable Data Augmentation
Felix Fuentes-Hurtado, Tom Delaire, Florian Levet, Jean-Baptiste Sibarita, Virgile Viasnoff.
2022 International Joint Conference on Neural Networks (IJCNN). 2022-07-18.
10.1109/IJCNN55064.2022.9892954
Automated high-speed 3D imaging of organoid cultures with multi-scale phenotypic quantification
Anne Beghin, Gianluca Grenci, Geetika Sahni, Su Guo, Harini Rajendiran, Tom Delaire, Saburnisha Binte Mohamad Raffi, Damien Blanc, Richard de Mets, Hui Ting Ong, Xareni Galindo, Anais Monet, Vidhyalakshmi Acharya, Victor Racine, Florian Levet, Remi Galland, Jean-Baptiste Sibarita, Virgile Viasnoff.
Nat Methods. 2022-06-13. 19(7) : 881-892.
10.1038/s41592-022-01508-0
Receptor tyrosine kinase MET ligand-interaction classified via machine learning from single-particle tracking data
Sebastian Malkusch, Johanna V. Rahm, Marina S. Dietz, Mike Heilemann, Jean-Baptiste Sibarita, Jörn Lötsch.
MBoC. 2022-05-15. 33(6)
10.1091/mbc.e21-10-0496
Multi-Dimensional Spectral Single Molecule Localization Microscopy
Corey Butler, G Ezequiel Saraceno, Adel Kechkar, Nathan Bénac, Vincent Studer, Julien P. Dupuis, Laurent Groc, Rémi Galland, Jean-Baptiste Sibarita.
Front. Bioinform.. 2022-03-04. 2
10.3389/fbinf.2022.813494
Molecular motion and tridimensional nanoscale localization of kindlin control integrin activation in focal adhesions.
Thomas Orré, Adrien Joly, Zeynep Karatas, Birgit Kastberger, Clément Cabriel, Ralph T. Böttcher, Sandrine Lévêque-Fort, Jean-Baptiste Sibarita, Reinhard Fässler, Bernhard Wehrle-Haller, Olivier Rossier, Grégory Giannone.
Nat Commun. 2021-05-25. 12(1)
10.1038/s41467-021-23372-w
NMDAR-dependent long-term depression is associated with increased short term plasticity through autophagy mediated loss of PSD-95
Benjamin Compans, Come Camus, Emmanouela Kallergi, Silvia Sposini, Magalie Martineau, Corey Butler, Adel Kechkar, Remco V. Klaassen, Natacha Retailleau, Terrence J. Sejnowski, August B. Smit, Jean-Baptiste Sibarita, Thomas M. Bartol, David Perrais, Vassiliki Nikoletopoulou, Daniel Choquet, Eric Hosy.
Nat Commun. 2021-05-14. 12(1)
10.1038/s41467-021-23133-9
CaMKII activation persistently segregates postsynaptic proteins via liquid phase separation
Tomohisa Hosokawa, Pin-Wu Liu, Qixu Cai, Joana S. Ferreira, Florian Levet, Corey Butler, Jean-Baptiste Sibarita, Daniel Choquet, Laurent Groc, Eric Hosy, Mingjie Zhang, Yasunori Hayashi.
Nat Neurosci. 2021-04-29.
10.1038/s41593-021-00843-3
Advanced imaging and labelling methods to decipher brain cell organization and function
Daniel Choquet, Matthieu Sainlos, Jean-Baptiste Sibarita.
Nat Rev Neurosci. 2021-03-12.
10.1038/s41583-021-00441-z
CaMKII activation triggers persistent formation and segregation of postsynaptic liquid phase
Tomohisa Hosokawa, Pin-Wu Liu, Qixu Cai, Joana S. Ferreira, Florian Levet, Corey Butler, Jean-Baptiste Sibarita, Daniel Choquet, Laurent Groc, Eric Hosy, Mingjie Zhang, Yasunori Hayashi.
. 2020-11-26.
10.1101/2020.11.25.397091
Distance-dependent regulation of NMDAR nanoscale organization along hippocampal neuron dendrites
Joana S. Ferreira, Julien P. Dupuis, Blanka Kellermayer, Nathan Bénac, Constance Manso, Delphine Bouchet, Florian Levet, Corey Butler, Jean-Baptiste Sibarita, Laurent Groc.
Proc Natl Acad Sci USA. 2020-09-14. : 201922477.
10.1073/pnas.1922477117
Amoeboid Swimming Is Propelled by Molecular Paddling in Lymphocytes
Laurene Aoun, Alexander Farutin, Nicolas Garcia-Seyda, Paulin Nègre, Mohd Suhail Rizvi, Sham Tlili, Solene Song, Xuan Luo, Martine Biarnes-Pelicot, Rémi Galland, Jean-Baptiste Sibarita, Alphée Michelot, Claire Hivroz, Salima Rafai, Marie-Pierre Valignat, Chaouqi Misbah, Olivier Theodoly.
Biophysical Journal. 2020-09-01. 119(6) : 1157-1177.
10.1016/j.bpj.2020.07.033
Nanoscale co-organization and coactivation of AMPAR, NMDAR, and mGluR at excitatory synapses
Julia Goncalves, Tomas M. Bartol, Côme Camus, Florian Levet, Ana Paula Menegolla, Terrence J. Sejnowski, Jean-Baptiste Sibarita, Michel Vivaudou, Daniel Choquet, Eric Hosy.
Proc Natl Acad Sci USA. 2020-06-08. : 201922563.
10.1073/pnas.1922563117
SpineJ: A software tool for quantitative analysis of nanoscale spine morphology
Florian Levet, Jan Tønnesen, U. Valentin Nägerl, Jean-Baptiste Sibarita.
Methods. 2020-03-01. 174 : 49-55.
10.1016/j.ymeth.2020.01.020
A Discrete Presynaptic Vesicle Cycle for Neuromodulator Receptors
Damien Jullié, Miriam Stoeber, Jean-Baptiste Sibarita, Hanna L. Zieger, Thomas M. Bartol, Seksiri Arttamangkul, Terrence J. Sejnowski, Eric Hosy, Mark von Zastrow.
Neuron. 2020-02-01. 105(4) : 663-677.e8.
10.1016/j.neuron.2019.11.016
Real-time nanoscale organization of amyloid precursor protein
Shekhar Kedia, Pratyush Ramakrishna, Pallavi Rao Netrakanti, Mini Jose, Jean-Baptiste Sibarita, Suhita Nadkarni, Deepak Nair.
Nanoscale. 2020-01-01. 12(15) : 8200-8215.
10.1039/d0nr00052c
A super-resolution platform for correlative live single-molecule imaging and STED microscopy
V. V. G. Krishna Inavalli, Martin O. Lenz, Corey Butler, Julie Angibaud, Benjamin Compans, Florian Levet, Jan Tønnesen, Olivier Rossier, Gregory Giannone, Olivier Thoumine, Eric Hosy, Daniel Choquet, Jean-Baptiste Sibarita, U. Valentin Nägerl.
Nat Methods. 2019-10-21.
10.1038/s41592-019-0611-8
SpineJ : A software tool for quantitative analysis of nanoscale spine morphology
Florian Levet, Jan Tønnesen, Valentin Nägerl, Jean-Baptiste Sibarita.
. 2019-09-10.
10.1101/764548
Transient Activations of Rac1 at the Lamellipodium Tip Trigger Membrane Protrusion.
Amine Mehidi, Olivier Rossier, Matthias Schaks, Anaël Chazeau, Fabien Binamé, Amanda Remorino, Mathieu Coppey, Zeynep Karatas, Jean-Baptiste Sibarita, Klemens Rottner, Violaine Moreau, Grégory Giannone.
Current Biology. 2019-09-01. 29(17) : 2852-2866.e5.
10.1016/j.cub.2019.07.035
Exchange Dynamics of Dynamin Measured in Living Cells During Endocytic Vesicle Formation
Léa Claverie, Morgane Rosendale, Patrice Maschalchi, Corey Butler, Natacha Retailleau, Jean-Baptiste Sibarita, Daniel Choquet, David Perrais.
Microsc Microanal. 2019-08-01. 25(S2) : 1240-1241.
10.1017/S1431927619006937
A tessellation-based colocalization analysis approach for single-molecule localization microscopy
Florian Levet, Guillaume Julien, Rémi Galland, Corey Butler, Anne Beghin, Anaël Chazeau, Philipp Hoess, Jonas Ries, Grégory Giannone, Jean-Baptiste Sibarita.
Nat Commun. 2019-05-30. 10(1)
10.1038/s41467-019-10007-4
Three-dimensional electron microscopy analysis of ndc10-1 mutant reveals an aberrant organization of the mitotic spindle and spindle pole body defects in Saccharomyces cerevisiae
Romao M, Tanaka K, Sibarita JB, Ly-Hartig NT, Tanaka TU, Antony C..
. 2008 Jul. 163(1) : 18-28.
10.1016/j.jsb.2008.03.015
Myosin va mediates docking of secretory granules at the plasma membrane
Desnos C, Huet S, Fanget I, Chapuis C, Böttiger C, Racine V, Sibarita JB, Henry JP, Darchen F.
J Neurosci. 2007-09-26. 27(39) : 10636-45.
27/39/10636 [pii]10.1523/JNEUROSCI.1228-07.2007
Surface trafficking of neurotransmitter receptor: comparison between single-molecule/quantum dot strategies
Groc L, Lafourcade M, Heine M, Renner M, Racine V, Sibarita JB, Lounis B, Choquet D, Cognet L..
J Neurosci.. 2007 Nov 14. 27(46) : 12433-7.
27/46/12433 [pii]10.1523/JNEUROSCI.3349-07.2007
The actin-based motor protein myosin II regulates MHC class II trafficking and BCR-driven antigen presentation
Vascotto F, Lankar D, Faure-André G, Vargas P, Diaz J, Le Roux D, Yuseff MI, Sibarita JB, Boes M, Raposo G, Mougneau E, Glaichenhaus N, Bonnerot C, Manoury B, Lennon-Duménil AM..
J Cell Biol.. 2007 Mar 26. 176(7) : 1007-19.
jcb.200611147 [pii]10.1083/jcb.200611147
The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions
Zuccolo M, Alves A, Galy V, Bolhy S, Formstecher E, Racine V, Sibarita JB, Fukagawa T, Shiekhattar R, Yen T, Doye V..
EMBO J.. 2007 Apr 4. 26(7) : 1853-64.
7601642 [pii]10.1038/sj.emboj.7601642
A role for the Rab6A’ GTPase in the inactivation of the Mad2-spindle checkpoint
Miserey-Lenkei S, Couëdel-Courteille A, Del Nery E, Bardin S, Piel M, Racine V, Sibarita JB, Perez F, Bornens M, Goud B..
EMBO J.. 2006 Jan 25. 25(2) : 278-89.
7600929 [pii]10.1038/sj.emboj.7600929
Anisotropy of cell adhesive microenvironment governs cell internal organization and orientation of polarity
Théry M(1), Racine V, Piel M, Pépin A, Dimitrov A, Chen Y, Sibarita JB, Bornens M..
Proc Natl Acad Sci U S A.. 2006 Dec 26. 103(52) : 19771-6.
0609267103 [pii]10.1073/pnas.0609267103
Pom1 kinase links division plane position to cell polarity by regulating Mid1p cortical distribution
Celton-Morizur S, Racine V, Sibarita JB, Paoletti A..
J Cell Sci.. 2006 Nov 15. 119(Pt 22) : 4710-8.
jcs.03261 [pii]10.1242/jcs.03261
The cellular pathway of CD1e in immature and maturing dendritic cells
Angénieux C, Fraisier V, Maître B, Racine V, van der Wel N, Fricker D, Proamer F, Sachse M, Cazenave JP, Peters P, Goud B, Hanau D, Sibarita JB, Salamero J, de la Salle H..
Traffic. 2005 Apr. 6(4) : 286-302.
TRA272 [pii]10.1111/j.1600-0854.2005.00272.x
Ankyrin G restricts ion channel diffusion at the axonal initial segment before the establishment of the diffusion barrier
Brachet A, Leterrier C, Irondelle M, Fache MP, Racine V, Sibarita JB, Choquet D, Dargent B..
J Cell Biol.. 2010 Oct 18. 191:(2) : 383-95.
jcb.201003042 [pii]10.1083/jcb.201003042
Inaugural Article: Fast live simultaneous multiwavelength four-dimensional optical microscopy
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1004037107 [pii] 10.1073/pnas.1004037107
AP-1 and KIF13A coordinate endosomal sorting and positioning during melanosome biogenesis
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jcb.200907122 [pii] 10.1083/jcb.200907122
Activity-dependent tuning of inhibitory neurotransmission based on GABAAR diffusion dynamics
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Neuron.. 2009-06-11. 62(5) : 670-82.
10.1016/j.neuron.2009.04.023.
The gene responsible for Dyggve-Melchior-Clausen syndrome encodes a novel peripheral membrane protein dynamically associated with the Golgi apparatus
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ddn371 [pii] 10.1093/hmg/ddn371
The extracellular matrix guides the orientation of the cell division axis
Théry M, Racine V, Pépin A, Piel M, Chen Y, Sibarita JB, Bornens M..
Nat Cell Biol.. 2005-10. 7(10) : 947-53.
ncb1307 [pii]10.1038/ncb1307
TI-VAMP/VAMP7 is required for optimal phagocytosis of opsonised particles in macrophages
Braun V, Fraisier V, Raposo G, Hurbain I, Sibarita JB, Chavrier P, Galli T, Niedergang F.
EMBO J.. 2004-10. 23(21) : 4166-76.
7600427 [pii]10.1038/sj.emboj.7600427
The entire Nup107-160 complex, including three new members, is targeted as one entity to kinetochores in mitosis
Loïodice I, Alves A, Rabut G, Van Overbeek M, Ellenberg J, Sibarita JB, Doye V..
Mol Biol Cell.. 2004-07-15. 15(7) : 3333-44.
10.1091/mbc.E03-12-0878E03-12-0878 [pii]
Microtubule release from the centrosome in migrating cells
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. 002-12-09.
10.1083/jcb.200207076jcb.200207076 [pii]
Relationship between cell migration and cell cycle during the initiation of epithelial to fibroblastoid transition
Bonneton C, Sibarita JB, Thiery JP..
Cell Motil Cytoskeleton.. 1999. 43(4) : 288-95.
10.1002/(SICI)1097-0169(1999)43:4<288::AID-CM2>3.0.CO;2-Y
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software
Daniel Sage, Thanh-An Pham, Hazen Babcock, Tomas Lukes, Thomas Pengo, Jerry Chao, Ramraj Velmurugan, Alex Herbert, Anurag Agrawal, Silvia Colabrese, Ann Wheeler, Anna Archetti, Bernd Rieger, Raimund Ober, Guy M. Hagen, Jean-Baptiste Sibarita, Jonas Ries, Ricardo Henriques, Michael Unser, Seamus Holden.
Nat Methods. 2019-04-08. 16(5) : 387-395.
10.1038/s41592-019-0364-4
Author Correction: Single molecule localisation microscopy reveals how HIV-1 Gag proteins sense membrane virus assembly sites in living host CD4 T cells
Charlotte Floderer, Jean-Baptiste Masson, Elise Boilley, Sonia Georgeault, Peggy Merida, Mohamed El Beheiry, Maxime Dahan, Philippe Roingeard, Jean-Baptiste Sibarita, Cyril Favard, Delphine Muriaux.
Sci Rep. 2018-11-22. 8(1)
10.1038/s41598-018-35954-8
Single molecule localisation microscopy reveals how HIV-1 Gag proteins sense membrane virus assembly sites in living host CD4 T cells
Charlotte Floderer, Jean-Baptiste Masson, Elise Boilley, Sonia Georgeault, Peggy Merida, Mohamed El Beheiry, Maxime Dahan, Philippe Roingeard, Jean-Baptiste Sibarita, Cyril Favard, Delphine Muriaux.
Sci Rep. 2018-11-02. 8(1)
10.1038/s41598-018-34536-y
Bacterial cell wall nanoimaging by autoblanking microscopy
Kevin Floc’h, Françoise Lacroix, Liliana Barbieri, Pascale Servant, Remi Galland, Corey Butler, Jean-Baptiste Sibarita, Dominique Bourgeois, Joanna Timmins.
Sci Rep. 2018-09-19. 8(1)
10.1038/s41598-018-32335-z
Bacterial cell wall nanoimaging by autoblinking microscopy
Kevin Floc’h, Françoise Lacroix, Liliana Barbieri, Pascale Servant, Remi Galland, Corey Butler, Jean-Baptiste Sibarita, Dominique Bourgeois, Joanna Timmins.
Sci Rep. 2018-09-19. 8(1)
10.1038/s41598-018-32335-z
Phosphatidylserine and GTPase activation control Cdc42 nanoclustering to counter dissipative diffusion
Elodie Sartorel, Caner Ünlü, Mini Jose, Aurélie Massoni-Laporte, Julien Meca, Jean-Baptiste Sibarita, Derek McCusker.
MBoC. 2018-06-01. 29(11) : 1299-1310.
10.1091/mbc.E18-01-0051
Catalytic activation of beta-arrestin by GPCRs
Kelsie Eichel, Damien Jullié, Benjamin Barsi-Rhyne, Naomi R. Latorraca, Matthieu Masureel, Jean-Baptiste Sibarita, Ron O. Dror, Mark von Zastrow.
Nature. 2018-05-01. 557(7705) : 381-386.
10.1038/s41586-018-0079-1
Live single molecule microscopy of HIV-1 assembly in host T cells reveals a spatio-temporal effect of the viral genome.
Charlotte Floderer, Jean-Baptiste Masson, Elise Boiley, Sonia Georgeault, Peggy Merida, Mohamed El Beheiry, Maxime Dahan, Philippe Roigeard, Jean-Baptiste Sibarita, Cyril Favard, Delphine Muriaux.
. 2018-02-19.
10.1101/267930
Localization-based super-resolution imaging meets high-content screening
Anne Beghin, Adel Kechkar, Corey Butler, Florian Levet, Marine Cabillic, Olivier Rossier, Gregory Giannone, Rémi Galland, Daniel Choquet, Jean-Baptiste Sibarita.
Nat Meth. 2017-10-30. 14(12) : 1184-1190.
10.1038/nmeth.4486
Nanoscale organization of synaptic adhesion proteins revealed by single-molecule localization microscopy
Ingrid Chamma, Florian Levet, Jean-Baptiste Sibarita, Matthieu Sainlos, Olivier Thoumine.
Neurophoton. 2016-11-03. 3(4) : 041810.
10.1117/1.NPh.3.4.041810
Hunting Down HIV-1 Gag Proteins at the Plasma Membrane of Human T Lymphocytes
Charlotte Mariani-Floderer, Jean-Baptiste Sibarita, Cyril Favard, Delphine M. Muriaux.
AIDS Research and Human Retroviruses. 2016-07-01. 32(7) : 658-659.
10.1089/aid.2016.0052
Mapping the dynamics and nanoscale organization of synaptic adhesion proteins using monomeric streptavidin.
Ingrid Chamma, Mathieu Letellier, Corey Butler, Béatrice Tessier, Kok-Hong Lim, Isabel Gauthereau, Daniel Choquet, Jean-Baptiste Sibarita, Sheldon Park, Matthieu Sainlos, Olivier Thoumine.
Nat Comms. 2016-03-16. 7 : 10773.
10.1038/ncomms10773
A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis
Mini Jose, Sylvain Tollis, Deepak Nair, Romain Mitteau, Christophe Velours, Aurelie Massoni-Laporte, Anne Royou, Jean-Baptiste Sibarita, Derek McCusker.
MBoC. 2015-07-01. 26(13) : 2519-2534.
10.1091/mbc.E14-11-1527
Two-tiered coupling between flowing actin and immobilized N-cadherin/catenin complexes in neuronal growth cones
Mikael Garcia, Cécile Leduc, Matthieu Lagardère, Amélie Argento, Jean-Baptiste Sibarita, Olivier Thoumine.
Proc Natl Acad Sci USA. 2015-05-18. 112(22) : 6997-7002.
10.1073/pnas.1423455112
Control of autophagosome axonal retrograde flux by presynaptic activity unveiled using botulinum neurotoxin type a
Tong Wang, Sally Martin, Andreas Papadopulos, Callista B. Harper, Timur A. Mavlyutov, Dhevahi Niranjan, Nick R. Glass, Justin J. Cooper-White, Jean-Baptiste Sibarita, Daniel Choquet, Bazbek Davletov, Frédéric A. Meunier.
J. Neurosci.. 2015-04-15. 35(15) : 6179-6194.
10.1523/JNEUROSCI.3757-14.2015
Synaptic recruitment of gephyrin regulates surface GABAA receptor dynamics for the expression of inhibitory LTP
Enrica Maria Petrini, Tiziana Ravasenga, Torben J. Hausrat, Giuliano Iurilli, Umberto Olcese, Victor Racine, Jean-Baptiste Sibarita, Tija C. Jacob, Stephen J. Moss, Fabio Benfenati, Paolo Medini, Matthias Kneussel, Andrea Barberis.
Nat Commun. 2014-06-04. 5(1)
10.1038/ncomms4921
Organization and dynamics of AMPA receptors inside synapses—nano-organization of AMPA receptors and main synaptic scaffolding proteins revealed by super-resolution imaging
Eric Hosy, Corey Butler, Jean-Baptiste Sibarita.
Current Opinion in Chemical Biology. 2014-06-01. 20 : 120-126.
https://www.bordeaux-neurocampus.fr/2173
Synaptic Control of Secretory Trafficking in Dendrites
Cyril Hanus, Lisa Kochen, Susanne tom Dieck, Victor Racine, Jean-Baptiste Sibarita, Erin M. Schuman, Michael D. Ehlers.
Cell Reports. 2014-06-01. 7(6) : 1771-1778.
10.1016/j.celrep.2014.05.028
High-density single-particle tracking: quantifying molecule organization and dynamics at the nanoscale
Jean-Baptiste Sibarita.
Histochem Cell Biol. 2014-03-27. 141(6) : 587-595.
10.1007/s00418-014-1214-1
Imaging of molecular surface dynamics in brain slices using single-particle tracking
B. Biermann, S. Sokoll, J. Klueva, M. Missler, J. S. Wiegert, J. -B. Sibarita, M. Heine.
Nat Commun. 2014-01-16. 5(1)
10.1038/ncomms4024
C11ORF24 Is a Novel Type I Membrane Protein That Cycles between the Golgi Apparatus and the Plasma Membrane in Rab6-Positive Vesicles
Vincent Fraisier, Amal Kasri, Stéphanie Miserey-Lenkei, Jean-Baptiste Sibarita, Deepak Nair, Adeline Mayeux, Sabine Bardin, Yusuke Toyoda, Ina Poser, Andrei Poznyakovskiy, Bruno Goud, Anthony A. Hyman, Ariane Dimitrov.
PLoS ONE. 2013-12-02. 8(12) : e82223.
10.1371/journal.pone.0082223
Identification and super-resolution imaging of ligand-activated receptor dimers in live cells
Pascale Winckler, Lydia Lartigue, Gregory Giannone, Francesca De Giorgi, François Ichas, Jean-Baptiste Sibarita, Brahim Lounis, Laurent Cognet.
Sci Rep. 2013-08-08. 3(1)
10.1038/srep02387
Super-Resolution Imaging Reveals That AMPA Receptors Inside Synapses Are Dynamically Organized in Nanodomains Regulated by PSD95
D. Nair, E. Hosy, J. D. Petersen, A. Constals, G. Giannone, D. Choquet, J.-B. Sibarita.
Journal of Neuroscience. 2013-08-07. 33(32)
10.1523/JNEUROSCI.2381-12.2013
Super-Resolution Imaging Reveals That AMPA Receptors Inside Synapses Are Dynamically Organized in Nanodomains Regulated by PSD95
D. Nair, E. Hosy, J. D. Petersen, A. Constals, G. Giannone, D. Choquet, J.-B. Sibarita.
Journal of Neuroscience. 2013-08-07. 33(32) : 13204-13224.
10.1523/JNEUROSCI.2381-12.2013
Super-Resolution Imaging Reveals That AMPA Receptors Inside Synapses Are Dynamically Organized in Nanodomains Regulated by PSD95
D. Nair, E. Hosy, J. D. Petersen, A. Constals, G. Giannone, D. Choquet, J.-B. Sibarita.
33. 2013-08-07. 33 : 13204-13224.
10.1523/JNEUROSCI.2381-12.2013
mSYD1A, a Mammalian Synapse-Defective-1 Protein, Regulates Synaptogenic Signaling and Vesicle Docking
Corinna Wentzel, Julia E. Sommer, Ramya Nair, Adeline Stiefvater, Jean-Baptiste Sibarita, Peter Scheiffele.
Neuron. 2013-06-01. 78(6) : 1012-1023.
10.1016/j.neuron.2013.05.010
Real-time analysis and visualization for single-molecule based super-resolution microscopy
Adel Kechkar, Deepak Nair, Mike Heilemann, Daniel Choquet, Jean-Baptiste Sibarita.
PLoS ONE. 2013-04-30. 8(4) : e62918.
10.1371/journal.pone.0062918
Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism
Mini Jose, Sylvain Tollis, Deepak Nair, Jean-Baptiste Sibarita, Derek McCusker.
J Cell Biol. 2013-02-11. 200(4) : 407-418.
10.1083/jcb.201206081
Targeting, resolving and quantifying cellular structures by single-molecule localization microscopy
Jean-Baptiste Sibarita, Mike Heilemann.
EMBO Rep. 2012-11-13. 13(12) : 1043-1045.
10.1038/embor.2012.177
Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging
N. Hoze, D. Nair, E. Hosy, C. Sieben, S. Manley, A. Herrmann, J.-B. Sibarita, D. Choquet, D. Holcman.
Proceedings of the National Academy of Sciences. 2012-10-03. 109(42)
10.1073/pnas.1204589109
Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging
N. Hoze, D. Nair, E. Hosy, C. Sieben, S. Manley, A. Herrmann, J.-B. Sibarita, D. Choquet, D. Holcman.
Proceedings of the National Academy of Sciences. 2012-10-03. 109(42) : 17052-17057.
10.1073/pnas.1204589109
Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging
N. Hoze, D. Nair, E. Hosy, C. Sieben, S. Manley, A. Herrmann, J.-B. Sibarita, D. Choquet, D. Holcman.
109. 2012-10-03. 109 : 17052-17057.
10.1073/pnas.1204589109
TNF-alpha influences the lateral dynamics of TNF receptor I in living cells
Meike Heidbreder, Christin Zander, Sebastian Malkusch, Darius Widera, Barbara Kaltschmidt, Christian Kaltschmidt, Deepak Nair, Daniel Choquet, Jean-Baptiste Sibarita, Mike Heilemann.
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 2012-10-01. 1823(10) : 1984-1989.
10.1016/j.bbamcr.2012.06.026
Unified quantitative model of AMPA receptor trafficking at synapses
K. Czondor, M. Mondin, M. Garcia, M. Heine, R. Frischknecht, D. Choquet, J.-B. Sibarita, O. R. Thoumine.
Proceedings of the National Academy of Sciences. 2012-02-13. 109(9) : 3522-3527.
10.1073/pnas.1109818109
Wavelet analysis for single molecule localization microscopy
I. Izeddin, J. Boulanger, V. Racine, C.G. Specht, A. Kechkar, D. Nair, A. Triller, D. Choquet, M. Dahan, J.B. Sibarita.
Opt. Express. 2012-01-17. 20(3) : 2081.
10.1364/OE.20.002081
Patch-based nonlocal functional for denoising fluorescence microscopy image sequences
J. Boulanger, C. Kervrann, P. Bouthemy, P. Elbau, J.-B. Sibarita, J. Salamero.
IEEE Trans. Med. Imaging. 2010-02-01. 29(2) : 442-454.
10.1109/TMI.2009.2033991
The interaction of IQGAP1 with the exocyst complex is required for tumor cell invasion downstream of Cdc42 and RhoA
Sakurai-Yageta M, Recchi C, Le Dez G, Sibarita JB, Daviet L, Camonis J, D'Souza-Schorey C, Chavrier P..
J Cell Biol.. 2008 Jun 16. 181(6) : 985-98.
jcb.200709076 [pii]10.1083/jcb.200709076
Visualization and quantification of vesicle trafficking on a three-dimensional cytoskeleton network in living cells
Racine V, Sachse M, Salamero J, Fraisier V, Trubuil A, Sibarita JB..
J Microsc.. 2007 Mar. 225(Pt 3) : 214-28.
JMI1723 [pii]10.1111/j.1365-2818.2007.01723.x
Image restoration in X-ray microscopy: PSF determination and biological applications
J. Lehr, J.-B. Sibarita, J.-M. Chassery.
IEEE Trans. on Image Process.. 1998-01-01. 7(2) : 258-263.
10.1109/83.661006